LGBT Manga outside Yaoi/Yuri

LGBT (gay, lesbian, bisexual, binary transgender, non-binary, genderqueer, intersex, queer, pansexual, asexual, aromantic, etc.) characters in mangas I've read that are not listed as Boy's Love or Girl's Love on MAL. Some are headcanons- those are indicated by question marks.

Anime Version: here

Part 2 (Manga): here


Honorable Mentions for those that are listed as Boy's Love or Girl's Love- even though they really shouldn't be because they're not primarily about MLM or WLW relationships:

Bokura no Hentai
Marika Aoki (trans girl) (protagonist)
Osamu "Parou" Tamura (gender non-conforming and gay) (main)
Ryousuke "Ryou" Kijima (gender non-conforming and bi) (main)
Satoshi "Tomochi" Natsume (gender non-conforming and bi) (supporting)

Kono Koi ni Mirai wa Nai
Yuuji Manase (trans woman) (protagonist)
Kotarou "Tora" Touri (gay) (supporting)
Kaoru (trans woman) (supporting)

Koisuru Sugar Cotton
Chiaki Tabata (trans girl) (protagonist)
Kiyoka (lesbian) (main)
Rika (lesbian) (supporting)

Sunu Sumu Muriku no Koibito
Naoki "Nao" Komura (bi) (protagonist)
Nono Nosaka (trans girl and bi) (main)
Kanami Shibata (bi and aro?) (supporting)
Nanako (trans man and bi) (supporting)
Nemoto-sensei (gay) (supporting)

Kaijuu ni Natta Gay
Takashi Arashiro (gay) (protagonist)
Junpei Naruse (gay) (main)
Liam (trans man) (minor)