Yuri Manga with Trans Characters

Yuri/Shoujo-Ai/Girl's Love/GL Manga with binary transgender, non-binary, and intersex characters. Some are headcanons- those are indicated by question marks.
Also, some of them feature a cis female + trans male relationship and shouldn't be labelled as GL.


Not on MAL (yet):

Josei ga Suki na Josei to Otoko datta Josei no Hanashi
Makoto (trans woman) (main)

Osananajimi Yuri (?)
College Girl (trans woman) (main)

Yurige no Heroine ni Tensei Shita Ore, Nazeka Are ga Haeta Mama desu
Hikaru Sawatari (trans girl) (protagonist)

Mukashi no Osanajimi, Otokonoko Janakatta Mitai
Yuuki (trans girl) (main)

Date Aite ga Ikemen ♀ Datta Ken
Ushio Toudou (non-binary) (main)

Atto Iu Man ni Wasureru (Namae no Hanashi)
Akane (non-binary) (protagonist)
*this particular story isn't GL, but the others are


Not considered GL, but GL-adjacent (some also not on MAL yet):

Otto wa Jitsu wa Josei Deshita
Wafuko (trans woman) (main)

Sayonara Chinchin Welcome Manman ~OL ni naritakute Seibetsu Tekigou Shujutsu shita~
Yoriko Kamikawa (trans woman) (protagonist)

Umareru Seibetsu wo Machigaeta!
Mafuyu Konishi (trans woman) (protagonist)

Seibetsu X
Asuka Miyazaki (x-gender) (protagonist)

Hourou Musuko
Shuuichi Nitori (trans girl) (protagonist)

Kyou kara Yonshimai
Kashiwa Manabe (trans woman) (main)

Densen Complex (Love Horizon)
Yuko Matsuno (trans woman) (main)

Kaoru-san no Kikyou (Senpai)
Shirafuji (trans woman) (main)

Ohana Holoholo
Maya Nagumo (trans woman?) (protagonist)

Devilman Lady
Asuka Lan (intersex girl) (main)

Kanojo ni Naru Hi: Another
Aya Kurokawa (male to female) (main)

Kanojo ni Naritai Kimi to Boku
Akira Yonezawa (trans girl) (main)

Girlfriend
Kaoru Shirasaki (trans woman) (main)

Shoujo Kakumei Utena
Utena Tenjou (genderqueer?) (protagonist)

Versailles no Bara
Oscar François de Jarjayes (genderqueer?) (main)

Silkscreen
They (genderfluid or trans man) (main)

Mahou Shoujo Madoka★Magica
Kyuubey (genderless) (main)

Concept Café-jou wa Koi wo Kiru
Tao (trans woman) (supporting)

Double House
Maho (trans woman) (protagonist)
Koko (trans woman) (supporting)